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--- cluster-guide [2024/05/06 23:02] – gabriele
+++ cluster-guide [2024/05/07 18:23] (current) – gabriele
@@ Line 1: / Line 1: @@
-====== Psychp01: Psychology's Cluster Manual ======
+====== Psychp01: RHUL Psychology Cluster Manual ======
-Gabriele Bellucci
+Gabriele Bellucci\\
 v.1
+(2024)
 :!: **The Cluster Manual is still under construction, so many sections might contain errors/mistake; please bear with us and feel free to contribute!**
+For questions, please use the discussion forum on each page of the cluster manual. To report any issues or errors with the cluster manual, email <gabriele.bellucci@rhul.ac.uk>.
+Acknowledging that overall there are two substantially different users who would want to use this manual in two fundamentally different ways, I have created two main routes to navigate this manual depending on whether you are here:
+ * [[cluster-toc|To know everything!]]
-For questions, please use the discussion forums on each page of the cluster manual. To report any issues or errors with the cluster manual, email <gabriele.bellucci@rhul.ac.uk>.
+ * [[cluster-faq|To get it done!]]
-~~TOC|Table of Content~~
+Moreover, for an offline document of the manual and demonstration videos, {{ :cluster_manual.pdf |please find here a pdf version of it}}.
-Getting Started with HPC on psychp01	6
-First Steps on psychp01	7
-Linux QuickStart	9
-New on Linux systems?	9
-Common Commands	9
-Text editing in command line	11
-Cluster access	13
-VPN connection	13
-Log in with SSH	13
-GUI access	15
-Running analyses on psychp01	17
-Transferring files to/from psychp01	18
-Transferring data	18
-Transferring code	18
-File Transfer Clients	18
-Bash files and Batch system	23
-Dos and don'ts	23
-Batch System	23
-Creating a job script	23
-How to pass command-line parameters to the job script	24
-Software on psychp01	25
-Advanced SLURM	26
-Running jobs	31
-Job Blueprint	32
-R example	35
-Python example	36
-MATLAB example	37
-Interactive Jobs	40
-Starting an interactive job	40
-Keeping interactive jobs alive	40
-Installing VPN Client – GlobalProtect	42
-Frequently Asked Questions	46