====== CLUSTER MANUAL ======


===== Table of Contents =====

  * [[cluster-prerequisites|Getting Started with HPC on psychp01]]
    * Prerequisites
    * High Performance Computing on psychp01
    * First Steps on psychp01
  * [[cluster-linux|Linux QuickStart]]
    * New on Linux systems?
    * Common Commands
    * Text editing in command line
    * Displaying images in command line
    * Displaying images from command line (using X11 forwarding)
    * Displaying NIFTI images in command line
    * X11 Forwarding
  * [[cluster-access|Cluster access]]
    * VPN connection
    * Log in with SSH
    * GUI access
  * [[cluster-analyses|Running analyses on psychp01]]
  * [[cluster-file_transfer|Transferring files to/from psychp01]]
    * Transferring data
    * Transferring code
    * File Transfer Clients
  * [[cluster-batch|Bash files and Batch system]]
    * Dos and don'ts
    * Batch System
    * Creating a job script
    * How to pass command-line parameters to the job script
  * [[cluster-softwares|Softwares on psychp01]]
  * [[cluster-advanced_slurm|Advanced SLURM]]
  * [[cluster-jobs|Running jobs]]
    * General information
    * Job Blueprint
    * R example
    * Python example
    * MATLAB example
  * [[cluster-ijobs|Interactive jobs]]
    * Starting an interactive job
    * Keep interactive jobs alive
  * [[cluster-vpn_install|Installing VPN client: Global Protect]]
  * [[cluster-faq|Frequently Asked Questions]]


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