====== Welcome to the CUBIC Wiki ======

The CUBIC wiki hosts a wealth of information to help you design, run, analyse and share your MRI experiments. General information on the centre can be found on the [[https://cubic.psychologyresearch.co.uk/|CUBIC website]].

This wiki is a **shared resource** for knowledge exchange which **all registered users can contribute to** (and indeed are strongly encouraged to do so). With the exception of policy and procedure documents, users can edit most of the sections below (if you can see a pen icon on the right hand side of the page, it means you have permission to modify that page). 

:!: //**Wikis rely on users to keep up to date**// - if you note something is incorrect or has changed, please add a note to the relevant section below. Equally, if you have expertise or knowledge about particular procedures, equipment, or practices, please share them with others here!

:!: **Important updates (e.g., changes in procedures) or error reports should be added to [[news-updates|Important updates]] page, as well as to the relevant section below (where applicable). **

:!: **The Wiki is still under construction, so many sections will be incomplete or non-existent; please bear with us and feel free to contribute!** 

:!: Please note that the subscription function for forums and updates is not yet working (due to Microsoft's email service classifying wiki emails as spoofing - Central IT is working on a fix). 

Please report any issues or errors with the wiki to <Carl.Hodgetts@rhul.ac.uk>.

**Find out more about how to use and update the wiki [[wiki-guide|here]].**





===== CUBIC community =====

  * [[wiki-guide|How to use/update the CUBIC wiki]]
  * [[news-updates|Important updates]]
  * [[user-forum | User discussion forum]]
  * [[tips-tricks| Tips and tricks]]
  * [[participants-APs-forum | Participants and APs wanted or available ]]
  * [[booking-forum | Scan cancellations & time swap forum ]]
  * [[new-starter|New starter guide]]
  * [[cubic-monthly|CUBIC Neuroscience Series]]
  * [[cubic-conference|CUBIC Conference]]
  * [[useful-contacts|CUBIC mailing list]]
  * [[cubic-skills|CUBIC skills database]]


===== Facilities and sequences =====

  * [[find-us|How to find us]]
  * [[scanner_description|Our 3T MRI Scanner]]
  * [[mri-sequences|Standard sequences]]
  * [[sequence-development|Developing/installing new sequences]]
  * [[stimulus-presentation|Stimulus presentation]]
  * [[peripheral-equipment|Peripheral equipment]]
  * [[data-storage|Computing cluster and data storage]]
  * [[data-download|How to download data from the scanner]]

===== How to start a new study =====

==== Compulsory procedure ====
  * [[new-study-rhul | Step-by-step guide (RHUL and non-RHUL users)]]
  * [[piloting-guide | Piloting at CUBIC]]
  * [[cubic-induction-meeting | CUBIC induction slides 2023]]

==== Training and safety ====
  * [[AP-training|How to become an approved MRI operator (AP)]]
  * [[AP-list|List of approved MRI operators (APs)]]
  * [[first-aid-courses|First Aid courses]]

===== Basic MRI procedures =====

  * [[key-guidelines|Summary of key procedures and rules]]
  * [[booking-policy |Scanner booking policy (RHUL users)]]
  * [[charges-cancellation-policy|MRI charges and cancellation policy (RHUL users)]]
  * Non-RHUL users: please consult your [[useful-contacts|CUBIC representative]] for information on how to book
  * [[https://www.supersaas.com/schedule/cubic/Scanner_Booking_System?view=month|Scanner booking system]]
  * {{ :cubic_rules_of_operation_2017-09-20.pdf |CUBIC Rules of Operation}}
  * {{ :mri-risk-assessment-2022_static_field.pdf |Static field risk assessment (for ethics applications)}}
  * {{ :mri-risk-assessment-2022_all_others.pdf |Risk assessment (others) (for ethics applications)}}

===== Participant procedures =====
  * [[recruitment|Participant recruitment (RHUL users)]]
  * [[incidental-finding|Incidental finding protocol]]
  * [[public-data-sharing|Public data sharing]] :!: Under construction
  * [[sharing-participants|Sharing brain images with participants]] :!: Under construction
  * [[participant-parking|Participant parking bays]] :!: Under construction




==== Forms ====

  * [[adult-forms|Adult participants]]
  * [[child-forms|Children]]




===== Computing and analysis resources =====

  * [[cluster-guide|Guide to the RHUL computing cluster]]
  * [[methods-training|Methods training at RHUL]]
  * [[high-performance-computing|Using the cluster and high performance computing facilities at RHUL]]
  * {{ :PsycHP01 User Guide.pdf|User_Guide for the New Cluster }}
  * [[linux-survival|Linux survival guide]] :!: Under construction
  * [[software-list|Software for neuroimaging]]
  * [[open-datasets|Open MRI datasets]]
  * [[stimulus-generation|Stimulus generation software]]
  * [[brain anatomy|Brain anatomy resources]]
  * [[BIDS-intro|BIDS neuroimaging data format]]

===== CUBIC partner pages =====

  * [[rhul-internal|Royal Holloway University of London]]
  * [[brunel-internal|Brunel University]]
  * [[roehampton-internal|Roehampton University]]
  * [[surrey-internal|University of Surrey]]



===== Useful links =====

  * **[[https://cubic.psychologyresearch.co.uk|CUBIC website]]**
  * **[[https://cubic-mri.slack.com|CUBIC Slack]]**
  * **[[useful-contacts|Contacts]]**