CLUSTER MANUAL

• Getting Started with HPC on psychp01
  • Prerequisites
  • High Performance Computing on psychp01
  • First Steps on psychp01
• Linux QuickStart
  • New on Linux systems?
  • Common Commands
  • Text editing in command line
  • Displaying images in command line
  • Displaying images from command line (using X11 forwarding)
  • Displaying NIFTI images in command line
  • X11 Forwarding
• Cluster access
  • VPN connection
  • Log in with SSH
  • GUI access
• Running analyses on psychp01
• Transferring files to/from psychp01
  • Transferring data
  • Transferring code
  • File Transfer Clients
• Bash files and Batch system
  • Dos and don'ts
  • Batch System
  • Creating a job script
  • How to pass command-line parameters to the job script
• Softwares on psychp01
• Advanced SLURM
• Running jobs
  • General information
  • Job Blueprint
  • R example
  • Python example
  • MATLAB example
• Interactive jobs
  • Starting an interactive job
  • Keep interactive jobs alive
• Installing VPN client: Global Protect
• Frequently Asked Questions

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